Bioinformatic resources

  1. Introduction to tag-sequencing using QIIME1 or QIIME2.
    • Implementing a snakemake workflow to make tag-sequencing pipeline more robust HERE
    • Building/prepping a database for use in QIIME2
  2. Generating figures from HTS tag-sequencing data - OTU or ASV table as input
  3. Resources for time-series analysis: code and analyses from A Hard Day’s Night
  4. Code from a metatranscriptomic survey of protistan trophic strategies
    • EukZoo database, an aquatic protistan protein database for meta-omics studies

Data management