Introduction to R

Generating figures from HTS tag-sequencing data - OTU or ASV table as input

Practical Ecology

Resources for time-series analysis: code and analyses from A Hard Day’s Night

Meta’omics

Code from a metatranscriptomic survey of protistan trophic strategies + EukZoo database, an aquatic protistan protein database for meta-omics studies

Amplicon sequence analysis

I am currently working on streamlined pipelines to determine Amplicon Sequence Variants (ASVs) or Operational Taxonomic Units (OTUs) using QIIME2 or DADA2 in R for use in environmental microbial ecology.

Introduction to tag-sequencing

QIIME1 or QIIME2.

Building reproducible pipeline for amplicon sequence analysis

Implementing a snakemake workflow to make tag-sequencing pipeline more robust HERE + Building/prepping a database for use in QIIME2

Data management

Else