Generating figures from HTS tag-sequencing data - OTU or ASV table as input
Code from a metatranscriptomic survey of protistan trophic strategies + EukZoo database, an aquatic protistan protein database for meta-omics studies
I am currently working on streamlined pipelines to determine Amplicon Sequence Variants (ASVs) or Operational Taxonomic Units (OTUs) using QIIME2 or DADA2 in R for use in environmental microbial ecology.
Keeping my R life organized details how I set up R with anaconda on my computer. Introduction to managing projects with conda environments. Includes description of R, RStudio, and IRKernel (jupyter notebooks).